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Manatees are indicator species who indicate the health of fragile coastal and wetland biomes, particularly that of seagrass meadows. Warming waters, unusually cold winters, water pollution, algae blooms, and seagrass loss all result in lower manatee numbers, as well as less healthy individuals.
These include canals and rivers
Manatee Chat "Identification and classification of manatee calls"
Pollution not only harms manatees directly, but can kill off the seagrass meadows where they feed.
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USGS Wetland and Aquatic Research Center "WARC conducts relevant and objective research, develops new approaches and technologies, and disseminates scientific information needed to understand, manage, conserve, and restore wetlands and other aquatic and coastal ecosystems and their associated plant and animal communities throughout the nation and the world."
Maps of Mining & Seismic Testing In Australia's Marine Reserves & Whale Habitats Dugong are found in some of these areas too.